J3_5NDJ_033
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUAC*GGCGAC
- Length
- 27 nucleotides
- Bulged bases
- 5NDJ|1|1G|A|1598, 5NDJ|1|1G|G|1599, 5NDJ|1|1G|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDJ|1|1G|G|1577
5NDJ|1|1G|U|1578
5NDJ|1|1G|U|1579
5NDJ|1|1G|U|1580
5NDJ|1|1G|A|1581
5NDJ|1|1G|A|1582
5NDJ|1|1G|U|1583
5NDJ|1|1G|U|1584
5NDJ|1|1G|C|1585
*
5NDJ|1|1G|G|1596
5NDJ|1|1G|A|1597
5NDJ|1|1G|A|1598
5NDJ|1|1G|G|1599
5NDJ|1|1G|A|1600
5NDJ|1|1G|A|1601
5NDJ|1|1G|C|1602
5NDJ|1|1G|C|1603
5NDJ|1|1G|U|1604
5NDJ|1|1G|U|1605
5NDJ|1|1G|A|1606
5NDJ|1|1G|C|1607
*
5NDJ|1|1G|G|1848
5NDJ|1|1G|G|1849
5NDJ|1|1G|C|1850
5NDJ|1|1G|G|1851
5NDJ|1|1G|A|1852
5NDJ|1|1G|C|1853
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 4A
- 30S ribosomal protein S13
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain AA
- 30S ribosomal protein S19
- Chain W4
- Transfer RNA; tRNA
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