J3_5NDJ_035

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAC*GGUGCC*GGAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|1G|G|1627
5NDJ|1|1G|A|1628
5NDJ|1|1G|A|1629
5NDJ|1|1G|C|1630
*
5NDJ|1|1G|G|1647
5NDJ|1|1G|G|1648
5NDJ|1|1G|U|1649
5NDJ|1|1G|G|1650
5NDJ|1|1G|C|1651
5NDJ|1|1G|C|1652
*
5NDJ|1|1G|G|1661
5NDJ|1|1G|G|1662
5NDJ|1|1G|A|1663
5NDJ|1|1G|G|1664
5NDJ|1|1G|C|1665

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 22

30S ribosomal protein S3