J3_5NDJ_052
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 5NDJ|1|1J|U|16, 5NDJ|1|1J|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDJ_052 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.1515
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDJ|1|1J|C|13
5NDJ|1|1J|C|14
5NDJ|1|1J|A|15
5NDJ|1|1J|U|16
5NDJ|1|1J|A|17
5NDJ|1|1J|G|18
*
5NDJ|1|1J|C|70
5NDJ|1|1J|G|71
*
5NDJ|1|1J|U|110
5NDJ|1|1J|C|111
5NDJ|1|1J|G|112
Current chains
- Chain 1J
- 5S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 65
- 50S ribosomal protein L18
- Chain D5
- 50S ribosomal protein L25
- Chain E5
- 50S ribosomal protein L27
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