J3_5NDJ_055
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 5NDJ|1|13|C|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDJ_055 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.1464
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDJ|1|13|C|1613
5NDJ|1|13|U|1614
5NDJ|1|13|U|1615
5NDJ|1|13|G|1616
5NDJ|1|13|A|1617
5NDJ|1|13|C|1618
5NDJ|1|13|A|1619
5NDJ|1|13|U|1620
*
5NDJ|1|13|A|1672
5NDJ|1|13|C|1673
5NDJ|1|13|A|1674
5NDJ|1|13|G|1675
*
5NDJ|1|13|C|1837
5NDJ|1|13|U|1838
5NDJ|1|13|U|1839
5NDJ|1|13|A|1840
5NDJ|1|13|C|1841
5NDJ|1|13|G|1842
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5I
- 30S ribosomal protein S14 type Z
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