J3_5NDJ_056

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGC*GUGUUG*CGCAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDJ|1|13|U|1701
5NDJ|1|13|G|1702
5NDJ|1|13|C|1703
*
5NDJ|1|13|G|1710
5NDJ|1|13|U|1711
5NDJ|1|13|G|1712
5NDJ|1|13|U|1713
5NDJ|1|13|U|1714
5NDJ|1|13|G|1715
*
5NDJ|1|13|C|1726
5NDJ|1|13|G|1727
5NDJ|1|13|C|1728
5NDJ|1|13|A|1729
5NDJ|1|13|A|1730

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1E

30S ribosomal protein S2

Chain 4E

30S ribosomal protein S5

Chain Y1

mRNA