J3_5NDV_041
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCUC*GAA*UAAAAGC
- Length
- 14 nucleotides
- Bulged bases
- 5NDV|1|5|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDV|1|5|G|2663
5NDV|1|5|C|2664
5NDV|1|5|U|2665
5NDV|1|5|C|2666
*
5NDV|1|5|G|2690
5NDV|1|5|A|2691
5NDV|1|5|A|2692
*
5NDV|1|5|U|2701
5NDV|1|5|A|2702
5NDV|1|5|A|2703
5NDV|1|5|A|2704
5NDV|1|5|A|2705
5NDV|1|5|G|2706
5NDV|1|5|C|2707
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain l5
- 60S ribosomal protein L5
- Chain m1
- 60S ribosomal protein L11-B
- Chain n1
- 60S ribosomal protein L21-A
- Chain q2
- 60S ribosomal protein L42-A
- Chain sM
- Suppressor protein STM1
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