J3_5NDV_051

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUCCAGAC*GGGUG*UUAGACGUU

Length

22 nucleotides

Bulged bases

5NDV|1|6|A|1217, 5NDV|1|6|G|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|6|G|1213
5NDV|1|6|U|1214
5NDV|1|6|C|1215
5NDV|1|6|C|1216
5NDV|1|6|A|1217
5NDV|1|6|G|1218
5NDV|1|6|A|1219
5NDV|1|6|C|1220
*
5NDV|1|6|G|1263
5NDV|1|6|G|1264
5NDV|1|6|G|1265
5NDV|1|6|U|1266
5NDV|1|6|G|1267
*
5NDV|1|6|U|1442
5NDV|1|6|U|1443
5NDV|1|6|A|1444
5NDV|1|6|G|1445
5NDV|1|6|A|1446
5NDV|1|6|C|1447
5NDV|1|6|G|1448
5NDV|1|6|U|1449
5NDV|1|6|U|1450

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain c5

40S ribosomal protein S15

Chain d9

40S ribosomal protein S29-A