J3_5NDV_061

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UU*AGAAGU*ACAUUUGA

Length

16 nucleotides

Bulged bases

5NDV|1|1|A|1065, 5NDV|1|1|U|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|1|U|986
5NDV|1|1|U|987
*
5NDV|1|1|A|1062
5NDV|1|1|G|1063
5NDV|1|1|A|1064
5NDV|1|1|A|1065
5NDV|1|1|G|1066
5NDV|1|1|U|1067
*
5NDV|1|1|A|1091
5NDV|1|1|C|1092
5NDV|1|1|A|1093
5NDV|1|1|U|1094
5NDV|1|1|U|1095
5NDV|1|1|U|1096
5NDV|1|1|G|1097
5NDV|1|1|A|1098

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L7

60S ribosomal protein L7-A

Chain N1

60S ribosomal protein L21-A

Chain N9

60S ribosomal protein L29