J3_5NDV_070
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 5NDV|1|5|U|117, 5NDV|1|5|G|120, 5NDV|1|5|A|121, 5NDV|1|5|U|147, 5NDV|1|5|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDV|1|5|C|113
5NDV|1|5|A|114
5NDV|1|5|A|115
5NDV|1|5|A|116
5NDV|1|5|U|117
5NDV|1|5|U|118
5NDV|1|5|U|119
5NDV|1|5|G|120
5NDV|1|5|A|121
5NDV|1|5|A|122
5NDV|1|5|A|123
5NDV|1|5|U|124
*
5NDV|1|5|A|144
5NDV|1|5|G|145
5NDV|1|5|U|146
5NDV|1|5|U|147
5NDV|1|5|G|148
5NDV|1|5|U|149
5NDV|1|5|A|150
5NDV|1|5|A|151
5NDV|1|5|U|152
5NDV|1|5|U|153
5NDV|1|5|U|154
5NDV|1|5|G|155
5NDV|1|5|G|156
5NDV|1|5|A|157
5NDV|1|5|G|158
*
5NDV|1|5|C|263
5NDV|1|5|G|264
5NDV|1|5|A|265
5NDV|1|5|A|266
5NDV|1|5|G|267
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l8
- 60S ribosomal protein L8-A
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o6
- 60S ribosomal protein L36-A
Coloring options: