J3_5NDV_075

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAC*GUAACUGAAU*AGGAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDV|1|5|C|1631
5NDV|1|5|A|1632
5NDV|1|5|C|1633
*
5NDV|1|5|G|1640
5NDV|1|5|U|1641
5NDV|1|5|A|1642
5NDV|1|5|A|1643
5NDV|1|5|C|1644
5NDV|1|5|U|1645
5NDV|1|5|G|1646
5NDV|1|5|A|1647
5NDV|1|5|A|1648
5NDV|1|5|U|1649
*
5NDV|1|5|A|1806
5NDV|1|5|G|1807
5NDV|1|5|G|1808
5NDV|1|5|A|1809
5NDV|1|5|A|1810
5NDV|1|5|G|1811

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain n7

60S ribosomal protein L27-A

Chain o4

60S ribosomal protein L34-A

Chain o8

60S ribosomal protein L38