J3_5NDV_084
3D structure
- PDB id
- 5NDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Paromomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 5NDV|1|6|U|1390, 5NDV|1|6|U|1413, 5NDV|1|6|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDV_084 not in the Motif Atlas
- Homologous match to J3_8P9A_083
- Geometric discrepancy: 0.1486
- The information below is about J3_8P9A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5NDV|1|6|A|1336
5NDV|1|6|A|1337
5NDV|1|6|C|1338
*
5NDV|1|6|G|1386
5NDV|1|6|G|1387
5NDV|1|6|A|1388
5NDV|1|6|C|1389
5NDV|1|6|U|1390
5NDV|1|6|A|1391
*
5NDV|1|6|U|1407
5NDV|1|6|G|1408
5NDV|1|6|G|1409
5NDV|1|6|A|1410
5NDV|1|6|A|1411
5NDV|1|6|G|1412
5NDV|1|6|U|1413
5NDV|1|6|U|1414
5NDV|1|6|U|1415
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c7
- 40S ribosomal protein S17-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain s5
- 40S ribosomal protein S5
- Chain sR
- Guanine nucleotide-binding protein subunit beta-like protein
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