J3_5NDW_004

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

5NDW|1|1|A|817, 5NDW|1|1|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|1|G|813
5NDW|1|1|U|814
5NDW|1|1|G|815
5NDW|1|1|A|816
5NDW|1|1|A|817
5NDW|1|1|C|818
5NDW|1|1|U|819
5NDW|1|1|A|820
*
5NDW|1|1|U|905
5NDW|1|1|A|906
5NDW|1|1|G|907
*
5NDW|1|1|C|923
5NDW|1|1|G|924
5NDW|1|1|A|925
5NDW|1|1|A|926
5NDW|1|1|C|927

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain L4

60S ribosomal protein L4-A

Chain M5

60S ribosomal protein L15-A

Chain O7

60S ribosomal protein L37-A

Chain O9

60S ribosomal protein L39