J3_5NDW_006
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 5NDW|1|1|A|1065, 5NDW|1|1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NDW_006 not in the Motif Atlas
- Homologous match to J3_5TBW_006
- Geometric discrepancy: 0.2058
- The information below is about J3_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDW|1|1|U|986
5NDW|1|1|U|987
*
5NDW|1|1|A|1062
5NDW|1|1|G|1063
5NDW|1|1|A|1064
5NDW|1|1|A|1065
5NDW|1|1|G|1066
*
5NDW|1|1|C|1092
5NDW|1|1|A|1093
5NDW|1|1|U|1094
5NDW|1|1|U|1095
5NDW|1|1|U|1096
5NDW|1|1|G|1097
5NDW|1|1|A|1098
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L7
- 60S ribosomal protein L7-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain N9
- 60S ribosomal protein L29
Coloring options: