J3_5NDW_057

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCAUAU*AGC*GUG

Length

12 nucleotides

Bulged bases

5NDW|1|7|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDW|1|7|C|9
5NDW|1|7|C|10
5NDW|1|7|A|11
5NDW|1|7|U|12
5NDW|1|7|A|13
5NDW|1|7|U|14
*
5NDW|1|7|A|66
5NDW|1|7|G|67
5NDW|1|7|C|68
*
5NDW|1|7|G|110
5NDW|1|7|U|111
5NDW|1|7|G|112

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain l5

60S ribosomal protein L5

Chain m0

60S ribosomal protein L10

Chain n1

60S ribosomal protein L21-A