J3_5NDW_059
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 5NDW|1|1|U|117, 5NDW|1|1|G|120, 5NDW|1|1|A|121, 5NDW|1|1|U|147, 5NDW|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDW|1|1|C|113
5NDW|1|1|A|114
5NDW|1|1|A|115
5NDW|1|1|A|116
5NDW|1|1|U|117
5NDW|1|1|U|118
5NDW|1|1|U|119
5NDW|1|1|G|120
5NDW|1|1|A|121
5NDW|1|1|A|122
5NDW|1|1|A|123
5NDW|1|1|U|124
*
5NDW|1|1|A|144
5NDW|1|1|G|145
5NDW|1|1|U|146
5NDW|1|1|U|147
5NDW|1|1|G|148
5NDW|1|1|U|149
5NDW|1|1|A|150
5NDW|1|1|A|151
5NDW|1|1|U|152
5NDW|1|1|U|153
5NDW|1|1|U|154
5NDW|1|1|G|155
5NDW|1|1|G|156
5NDW|1|1|A|157
5NDW|1|1|G|158
*
5NDW|1|1|C|263
5NDW|1|1|G|264
5NDW|1|1|A|265
5NDW|1|1|A|266
5NDW|1|1|G|267
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L8
- 60S ribosomal protein L8-A
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain O5
- 60S ribosomal protein L35-A
- Chain O6
- 60S ribosomal protein L36-A
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