J3_5NDW_063
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAACUA*UAGGG*UAAUCGAAC
- Length
- 22 nucleotides
- Bulged bases
- 5NDW|1|1|A|921, 5NDW|1|1|U|922, 5NDW|1|1|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDW|1|1|G|813
5NDW|1|1|U|814
5NDW|1|1|G|815
5NDW|1|1|A|816
5NDW|1|1|A|817
5NDW|1|1|C|818
5NDW|1|1|U|819
5NDW|1|1|A|820
*
5NDW|1|1|U|905
5NDW|1|1|A|906
5NDW|1|1|G|907
5NDW|1|1|G|908
5NDW|1|1|G|909
*
5NDW|1|1|U|919
5NDW|1|1|A|920
5NDW|1|1|A|921
5NDW|1|1|U|922
5NDW|1|1|C|923
5NDW|1|1|G|924
5NDW|1|1|A|925
5NDW|1|1|A|926
5NDW|1|1|C|927
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain L4
- 60S ribosomal protein L4-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain M7
- 60S ribosomal protein L17-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O9
- 60S ribosomal protein L39
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