J3_5NDW_064
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 5NDW|1|1|C|1556, 5NDW|1|1|A|1558, 5NDW|1|1|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDW|1|1|A|1537
5NDW|1|1|G|1538
5NDW|1|1|A|1539
5NDW|1|1|U|1540
5NDW|1|1|G|1541
5NDW|1|1|G|1542
*
5NDW|1|1|C|1551
5NDW|1|1|G|1552
5NDW|1|1|U|1553
5NDW|1|1|U|1554
5NDW|1|1|U|1555
5NDW|1|1|C|1556
5NDW|1|1|A|1557
5NDW|1|1|A|1558
5NDW|1|1|A|1559
5NDW|1|1|G|1560
*
5NDW|1|1|C|1579
5NDW|1|1|A|1580
5NDW|1|1|C|1581
5NDW|1|1|C|1582
5NDW|1|1|A|1583
5NDW|1|1|U|1584
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L2
- 60S ribosomal protein L2-A
- Chain L8
- 60S ribosomal protein L8-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain N5
- 60S ribosomal protein L25
- Chain O7
- 60S ribosomal protein L37-A
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