J3_5NG8_002

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AC*GAUAUGC*GAUUU

Length

14 nucleotides

Bulged bases

5NG8|1|AA|U|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_002 not in the Motif Atlas

Geometric match to J3_7A0S_002

Geometric discrepancy: 0.1136

The information below is about J3_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.1

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

5NG8|1|AA|A|56
5NG8|1|AA|C|57
*
5NG8|1|AA|G|70
5NG8|1|AA|A|71
5NG8|1|AA|U|72
5NG8|1|AA|A|73
5NG8|1|AA|U|74
5NG8|1|AA|G|75
5NG8|1|AA|C|76
*
5NG8|1|AA|G|109
5NG8|1|AA|A|110
5NG8|1|AA|U|111
5NG8|1|AA|U|112
5NG8|1|AA|U|113

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AR

50S ribosomal protein L23

Chain AW

50S ribosomal protein L29