J3_5NG8_004

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5NG8|1|AA|U|731, 5NG8|1|AA|G|837, 5NG8|1|AA|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_004 not in the Motif Atlas

Geometric match to J3_8CRE_009

Geometric discrepancy: 0.0923

The information below is about J3_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5NG8|1|AA|U|728
5NG8|1|AA|G|729
5NG8|1|AA|A|730
5NG8|1|AA|U|731
5NG8|1|AA|C|732
5NG8|1|AA|U|733
5NG8|1|AA|A|734
*
5NG8|1|AA|U|818
5NG8|1|AA|A|819
5NG8|1|AA|G|820
*
5NG8|1|AA|C|836
5NG8|1|AA|G|837
5NG8|1|AA|A|838
5NG8|1|AA|A|839

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AC

50S ribosomal protein L2