J3_5NG8_008

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUG*CUAACCC*GGAGACAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|AA|U|2118
5NG8|1|AA|U|2119
5NG8|1|AA|G|2120
*
5NG8|1|AA|C|2223
5NG8|1|AA|U|2224
5NG8|1|AA|A|2225
5NG8|1|AA|A|2226
5NG8|1|AA|C|2227
5NG8|1|AA|C|2228
5NG8|1|AA|C|2229
*
5NG8|1|AA|G|2248
5NG8|1|AA|G|2249
5NG8|1|AA|A|2250
5NG8|1|AA|G|2251
5NG8|1|AA|A|2252
5NG8|1|AA|C|2253
5NG8|1|AA|A|2254
5NG8|1|AA|G|2255

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain AV

50S ribosomal protein L28