J3_5NG8_024

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

5NG8|1|Aa|U|1250, 5NG8|1|Aa|A|1309, 5NG8|1|Aa|U|1311, 5NG8|1|Aa|U|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Aa|C|1247
5NG8|1|Aa|A|1248
5NG8|1|Aa|A|1249
5NG8|1|Aa|U|1250
5NG8|1|Aa|G|1251
*
5NG8|1|Aa|C|1306
5NG8|1|Aa|U|1307
5NG8|1|Aa|C|1308
5NG8|1|Aa|A|1309
5NG8|1|Aa|G|1310
5NG8|1|Aa|U|1311
5NG8|1|Aa|U|1312
5NG8|1|Aa|C|1313
*
5NG8|1|Aa|G|1344
5NG8|1|Aa|C|1345
5NG8|1|Aa|U|1346
5NG8|1|Aa|G|1347

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ag

30S ribosomal protein S7

Chain Am

30S ribosomal protein S13