J3_5NG8_029

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_029 not in the Motif Atlas

Geometric match to J3_4WF9_003

Geometric discrepancy: 0.078

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

5NG8|1|BA|C|743
5NG8|1|BA|A|744
5NG8|1|BA|G|745
*
5NG8|1|BA|C|777
5NG8|1|BA|G|778
5NG8|1|BA|A|779
5NG8|1|BA|A|780
5NG8|1|BA|C|781
*
5NG8|1|BA|G|805
5NG8|1|BA|A|806
5NG8|1|BA|U|807
5NG8|1|BA|G|808

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2