J3_5NG8_035

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NG8_035 not in the Motif Atlas

Geometric match to J3_9DFE_018

Geometric discrepancy: 0.2411

The information below is about J3_9DFE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5NG8|1|BA|C|2816
5NG8|1|BA|A|2817
*
5NG8|1|BA|U|2826
5NG8|1|BA|A|2827
5NG8|1|BA|U|2828
5NG8|1|BA|A|2829
5NG8|1|BA|A|2830
5NG8|1|BA|G|2831
*
5NG8|1|BA|C|2909
5NG8|1|BA|G|2910
5NG8|1|BA|A|2911
5NG8|1|BA|A|2912
5NG8|1|BA|G|2913

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3