J3_5NG8_037

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAUAG*CGU*AACG

Length

13 nucleotides

Bulged bases

5NG8|1|BB|U|10, 5NG8|1|BB|U|12, 5NG8|1|BB|C|105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|BB|C|9
5NG8|1|BB|U|10
5NG8|1|BB|A|11
5NG8|1|BB|U|12
5NG8|1|BB|A|13
5NG8|1|BB|G|14
*
5NG8|1|BB|C|66
5NG8|1|BB|G|67
5NG8|1|BB|U|68
*
5NG8|1|BB|A|103
5NG8|1|BB|A|104
5NG8|1|BB|C|105
5NG8|1|BB|G|106

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BU

50S ribosomal protein L27