J3_5NG8_051

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UCGGGUCC*GGAUAA*UA

Length

16 nucleotides

Bulged bases

5NG8|1|AA|C|1387, 5NG8|1|AA|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|AA|U|1381
5NG8|1|AA|C|1382
5NG8|1|AA|G|1383
5NG8|1|AA|G|1384
5NG8|1|AA|G|1385
5NG8|1|AA|U|1386
5NG8|1|AA|C|1387
5NG8|1|AA|C|1388
*
5NG8|1|AA|G|1417
5NG8|1|AA|G|1418
5NG8|1|AA|A|1419
5NG8|1|AA|U|1420
5NG8|1|AA|A|1421
5NG8|1|AA|A|1422
*
5NG8|1|AA|U|1439
5NG8|1|AA|A|1440

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L23