J3_5NG8_053

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCUC*GACUUAGUGAUCC*GCUCAAC

Length

24 nucleotides

Bulged bases

5NG8|1|AA|U|2417, 5NG8|1|AA|A|2453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|AA|G|2309
5NG8|1|AA|C|2310
5NG8|1|AA|U|2311
5NG8|1|AA|C|2312
*
5NG8|1|AA|G|2410
5NG8|1|AA|A|2411
5NG8|1|AA|C|2412
5NG8|1|AA|U|2413
5NG8|1|AA|U|2414
5NG8|1|AA|A|2415
5NG8|1|AA|G|2416
5NG8|1|AA|U|2417
5NG8|1|AA|G|2418
5NG8|1|AA|A|2419
5NG8|1|AA|U|2420
5NG8|1|AA|C|2421
5NG8|1|AA|C|2422
*
5NG8|1|AA|G|2448
5NG8|1|AA|C|2449
5NG8|1|AA|U|2450
5NG8|1|AA|C|2451
5NG8|1|AA|A|2452
5NG8|1|AA|A|2453
5NG8|1|AA|C|2454

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L33

Chain A3

50S ribosomal protein L35

Chain AJ

50S ribosomal protein L15

Chain AU

50S ribosomal protein L27