J3_5NG8_058

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUGACAAC*GCCUUCC*GGACAA

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Aa|U|1010
5NG8|1|Aa|U|1011
5NG8|1|Aa|G|1012
5NG8|1|Aa|A|1013
5NG8|1|Aa|C|1014
5NG8|1|Aa|A|1015
5NG8|1|Aa|A|1016
5NG8|1|Aa|C|1017
*
5NG8|1|Aa|G|1030
5NG8|1|Aa|C|1031
5NG8|1|Aa|C|1032
5NG8|1|Aa|U|1033
5NG8|1|Aa|U|1034
5NG8|1|Aa|C|1035
5NG8|1|Aa|C|1036
*
5NG8|1|Aa|G|1045
5NG8|1|Aa|G|1046
5NG8|1|Aa|A|1047
5NG8|1|Aa|C|1048
5NG8|1|Aa|A|1049
5NG8|1|Aa|A|1050

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains