J3_5NG8_067

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAGACGGUCUUGCUGUCAC

Length

35 nucleotides

Bulged bases

5NG8|1|Ba|U|183, 5NG8|1|Ba|A|211, 5NG8|1|Ba|U|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NG8|1|Ba|G|142
5NG8|1|Ba|A|143
5NG8|1|Ba|C|144
*
5NG8|1|Ba|G|178
5NG8|1|Ba|A|179
5NG8|1|Ba|U|180
5NG8|1|Ba|A|181
5NG8|1|Ba|A|182
5NG8|1|Ba|U|183
5NG8|1|Ba|A|184
5NG8|1|Ba|U|185
*
5NG8|1|Ba|A|206
5NG8|1|Ba|G|207
5NG8|1|Ba|U|208
5NG8|1|Ba|G|209
5NG8|1|Ba|A|210
5NG8|1|Ba|A|211
5NG8|1|Ba|A|212
5NG8|1|Ba|G|213
5NG8|1|Ba|A|214
5NG8|1|Ba|C|215
5NG8|1|Ba|G|216
5NG8|1|Ba|G|217
5NG8|1|Ba|U|218
5NG8|1|Ba|C|219
5NG8|1|Ba|U|220
5NG8|1|Ba|U|221
5NG8|1|Ba|G|222
5NG8|1|Ba|C|223
5NG8|1|Ba|U|224
5NG8|1|Ba|G|225
5NG8|1|Ba|U|226
5NG8|1|Ba|C|227
5NG8|1|Ba|A|228
5NG8|1|Ba|C|229

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bp

30S ribosomal protein S16

Chain Bt

30S ribosomal protein S20