3D structure

PDB id
5NO2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.16 Å

Loop

Sequence
UAGAAU*GGAAUACCGGUGG*CGG
Length
22 nucleotides
Bulged bases
5NO2|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5NO2|1|A|U|672
5NO2|1|A|A|673
5NO2|1|A|G|674
5NO2|1|A|A|675
5NO2|1|A|A|676
5NO2|1|A|U|677
*
5NO2|1|A|G|713
5NO2|1|A|G|714
5NO2|1|A|A|715
5NO2|1|A|A|716
5NO2|1|A|U|717
5NO2|1|A|A|718
5NO2|1|A|C|719
5NO2|1|A|C|720
5NO2|1|A|G|721
5NO2|1|A|G|722
5NO2|1|A|U|723
5NO2|1|A|G|724
5NO2|1|A|G|725
*
5NO2|1|A|C|732
5NO2|1|A|G|733
5NO2|1|A|G|734

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain F
30S ribosomal protein S6
Chain K
30S ribosomal protein S11
Chain O
30S ribosomal protein S15
Chain R
30S ribosomal protein S18

Coloring options:

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