J3_5NWY_002
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NWY_002 not in the Motif Atlas
- Homologous match to J3_5J7L_002
- Geometric discrepancy: 0.0949
- The information below is about J3_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5NWY|1|0|C|586
5NWY|1|0|G|587
5NWY|1|0|G|588
*
5NWY|1|0|C|651
5NWY|1|0|U|652
5NWY|1|0|U|653
5NWY|1|0|G|654
*
5NWY|1|0|C|754
5NWY|1|0|G|755
Current chains
- Chain 0
- 16S rRNA
Nearby chains
- Chain 7
- 30S ribosomal protein S8
- Chain B
- 30S ribosomal protein S12
- Chain E
- 30S ribosomal protein S15
- Chain G
- 30S ribosomal protein S17
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