J3_5NWY_016

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5NWY|1|N|U|686, 5NWY|1|N|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NWY_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0668

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5NWY|1|N|U|683
5NWY|1|N|G|684
5NWY|1|N|A|685
5NWY|1|N|U|686
5NWY|1|N|C|687
5NWY|1|N|U|688
5NWY|1|N|A|689
*
5NWY|1|N|U|773
5NWY|1|N|G|774
5NWY|1|N|G|775
*
5NWY|1|N|C|791
5NWY|1|N|A|792
5NWY|1|N|A|793
5NWY|1|N|A|794

Current chains

Chain N

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L2

Chain p

50S ribosomal protein L34

Chain s

VemP nascent chain