J3_5NWY_024

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5NWY|1|N|A|2518, 5NWY|1|N|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NWY_024 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0755

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5NWY|1|N|C|2517
5NWY|1|N|A|2518
5NWY|1|N|U|2519
5NWY|1|N|C|2520
*
5NWY|1|N|G|2545
5NWY|1|N|U|2546
5NWY|1|N|A|2547
*
5NWY|1|N|U|2561
5NWY|1|N|U|2562
5NWY|1|N|U|2563
5NWY|1|N|A|2564
5NWY|1|N|A|2565
5NWY|1|N|A|2566
5NWY|1|N|G|2567

Current chains

Chain N

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain X

50S ribosomal protein L14