J3_5NWY_027
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 5NWY|1|O|U|14, 5NWY|1|O|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NWY_027 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.0913
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5NWY|1|O|G|10
5NWY|1|O|C|11
5NWY|1|O|C|12
5NWY|1|O|G|13
5NWY|1|O|U|14
5NWY|1|O|A|15
5NWY|1|O|G|16
*
5NWY|1|O|C|68
5NWY|1|O|G|69
5NWY|1|O|C|70
*
5NWY|1|O|G|106
5NWY|1|O|G|107
5NWY|1|O|A|108
5NWY|1|O|A|109
5NWY|1|O|C|110
Current chains
- Chain O
- 5S rRNA
Nearby chains
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain b
- 50S ribosomal protein L18
- Chain j
- 50S ribosomal protein L27
Coloring options: