J3_5NWY_030

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5NWY|1|0|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5NWY_030 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.111

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5NWY|1|0|C|990
5NWY|1|0|U|991
5NWY|1|0|U|992
5NWY|1|0|G|993
5NWY|1|0|A|994
5NWY|1|0|C|995
5NWY|1|0|A|996
5NWY|1|0|U|997
*
5NWY|1|0|A|1044
5NWY|1|0|C|1045
5NWY|1|0|A|1046
5NWY|1|0|G|1047
*
5NWY|1|0|C|1210
5NWY|1|0|U|1211
5NWY|1|0|U|1212
5NWY|1|0|A|1213
5NWY|1|0|C|1214
5NWY|1|0|G|1215

Current chains

Chain 0

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S14