J3_5O2R_005

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAU*AUUUAAAGAAA*UCAC

Length

19 nucleotides

Bulged bases

5O2R|1|A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O2R|1|A|G|1055
5O2R|1|A|G|1056
5O2R|1|A|A|1057
5O2R|1|A|U|1058
*
5O2R|1|A|A|1080
5O2R|1|A|U|1081
5O2R|1|A|U|1082
5O2R|1|A|U|1083
5O2R|1|A|A|1084
5O2R|1|A|A|1085
5O2R|1|A|A|1086
5O2R|1|A|G|1087
5O2R|1|A|A|1088
5O2R|1|A|A|1089
5O2R|1|A|A|1090
*
5O2R|1|A|U|1101
5O2R|1|A|C|1102
5O2R|1|A|A|1103
5O2R|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain 5

50S ribosomal protein L10

Chain I

50S ribosomal protein L11