J3_5O2R_008

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGACC*GAAAC*GUA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O2R|1|A|U|1344
5O2R|1|A|C|1345
5O2R|1|A|G|1346
5O2R|1|A|A|1347
5O2R|1|A|C|1348
5O2R|1|A|C|1349
*
5O2R|1|A|G|1382
5O2R|1|A|A|1383
5O2R|1|A|A|1384
5O2R|1|A|A|1385
5O2R|1|A|C|1386
*
5O2R|1|A|G|1401
5O2R|1|A|U|1402
5O2R|1|A|A|1403

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23