J3_5O2R_011

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5O2R|1|A|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O2R_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1127

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5O2R|1|A|C|2517
5O2R|1|A|A|2518
5O2R|1|A|U|2519
5O2R|1|A|C|2520
*
5O2R|1|A|G|2545
5O2R|1|A|U|2546
5O2R|1|A|A|2547
*
5O2R|1|A|U|2561
5O2R|1|A|U|2562
5O2R|1|A|U|2563
5O2R|1|A|A|2564
5O2R|1|A|A|2565
5O2R|1|A|A|2566
5O2R|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14