J3_5O2R_030

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5O2R|1|A|U|321, 5O2R|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5O2R_030 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0798

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5O2R|1|A|G|297
5O2R|1|A|G|298
5O2R|1|A|A|299
5O2R|1|A|A|300
5O2R|1|A|G|301
*
5O2R|1|A|C|316
5O2R|1|A|G|317
5O2R|1|A|C|318
5O2R|1|A|G|319
5O2R|1|A|A|320
5O2R|1|A|U|321
5O2R|1|A|A|322
5O2R|1|A|C|323
5O2R|1|A|A|324
5O2R|1|A|G|325
*
5O2R|1|A|C|337
5O2R|1|A|G|338
5O2R|1|A|U|339
5O2R|1|A|A|340
5O2R|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24