J3_5O5J_018
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 5O5J|1|A|U|1164
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5O5J_018 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.135
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5O5J|1|A|U|1096
5O5J|1|A|G|1097
5O5J|1|A|U|1098
*
5O5J|1|A|A|1136
5O5J|1|A|G|1137
5O5J|1|A|A|1138
5O5J|1|A|C|1139
5O5J|1|A|U|1140
5O5J|1|A|G|1141
5O5J|1|A|C|1142
*
5O5J|1|A|G|1156
5O5J|1|A|A|1157
5O5J|1|A|G|1158
5O5J|1|A|G|1159
5O5J|1|A|A|1160
5O5J|1|A|A|1161
5O5J|1|A|G|1162
5O5J|1|A|G|1163
5O5J|1|A|U|1164
5O5J|1|A|G|1165
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
- Chain V
- 30S ribosomal protein S2
Coloring options: