J3_5O9Z_001
3D structure
- PDB id
- 5O9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CAGUA*UUAUU*AUGG
- Length
- 14 nucleotides
- Bulged bases
- 5O9Z|1|4|G|18, 5O9Z|1|4|U|19, 5O9Z|1|4|U|53
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5O9Z|1|4|C|16
5O9Z|1|4|A|17
5O9Z|1|4|G|18
5O9Z|1|4|U|19
5O9Z|1|4|A|20
*
5O9Z|1|4|U|52
5O9Z|1|4|U|53
5O9Z|1|4|A|54
5O9Z|1|4|U|55
5O9Z|1|4|U|56
*
5O9Z|1|6|A|56
5O9Z|1|6|U|57
5O9Z|1|6|G|58
5O9Z|1|6|G|59
Current chains
- Chain 4
- Homo sapiens U4A snRNA
- Chain 6
- Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain E
- U4/U6 small nuclear ribonucleoprotein Prp3
- Chain G
- Pre-mRNA-processing factor 6
- Chain H
- U4/U6 small nuclear ribonucleoprotein Prp31
Coloring options: