J3_5OBM_029
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 5OBM|1|5|U|117, 5OBM|1|5|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OBM_029 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.0729
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5OBM|1|5|C|113
5OBM|1|5|A|114
5OBM|1|5|A|115
5OBM|1|5|A|116
5OBM|1|5|U|117
5OBM|1|5|U|118
5OBM|1|5|U|119
5OBM|1|5|G|120
5OBM|1|5|A|121
5OBM|1|5|A|122
5OBM|1|5|A|123
*
5OBM|1|5|U|149
5OBM|1|5|A|150
5OBM|1|5|A|151
5OBM|1|5|U|152
5OBM|1|5|U|153
5OBM|1|5|U|154
5OBM|1|5|G|155
5OBM|1|5|G|156
5OBM|1|5|A|157
5OBM|1|5|G|158
*
5OBM|1|5|C|263
5OBM|1|5|G|264
5OBM|1|5|A|265
5OBM|1|5|A|266
5OBM|1|5|G|267
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l8
- 60S ribosomal protein L8-A
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o6
- 60S ribosomal protein L36-A
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