J3_5OBM_067
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 5OBM|1|1|C|2760, 5OBM|1|1|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OBM_067 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.0705
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5OBM|1|1|G|2651
5OBM|1|1|U|2652
5OBM|1|1|C|2653
*
5OBM|1|1|G|2754
5OBM|1|1|C|2755
5OBM|1|1|C|2756
5OBM|1|1|U|2757
5OBM|1|1|A|2758
5OBM|1|1|U|2759
5OBM|1|1|C|2760
5OBM|1|1|G|2761
5OBM|1|1|A|2762
5OBM|1|1|U|2763
5OBM|1|1|C|2764
5OBM|1|1|C|2765
*
5OBM|1|1|G|2793
5OBM|1|1|G|2794
5OBM|1|1|U|2795
5OBM|1|1|G|2796
5OBM|1|1|C|2797
5OBM|1|1|C|2798
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M8
- 60S ribosomal protein L18-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain N8
- 60S ribosomal protein L28
- Chain Q2
- 60S ribosomal protein L42-A
Coloring options: