J3_5OBM_082
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 5OBM|1|6|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5OBM_082 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.09
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5OBM|1|6|U|633
5OBM|1|6|G|634
5OBM|1|6|A|635
*
5OBM|1|6|U|861
5OBM|1|6|A|862
5OBM|1|6|A|863
5OBM|1|6|U|864
5OBM|1|6|A|865
5OBM|1|6|G|866
*
5OBM|1|6|C|962
5OBM|1|6|A|963
5OBM|1|6|U|964
5OBM|1|6|U|965
5OBM|1|6|A|966
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain c3
- 40S ribosomal protein S13
- Chain d2
- 40S ribosomal protein S22-A
- Chain d3
- 40S ribosomal protein S23-A
- Chain d7
- 40S ribosomal protein S27-A
- Chain s7
- 40S ribosomal protein S7-A
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