J3_5ON6_068

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUUUG*CUUAGAUGUA*UCUG

Length

20 nucleotides

Bulged bases

5ON6|1|1|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ON6|1|1|C|3298
5ON6|1|1|A|3299
5ON6|1|1|U|3300
5ON6|1|1|U|3301
5ON6|1|1|U|3302
5ON6|1|1|G|3303
*
5ON6|1|1|C|3311
5ON6|1|1|U|3312
5ON6|1|1|U|3313
5ON6|1|1|A|3314
5ON6|1|1|G|3315
5ON6|1|1|A|3316
5ON6|1|1|U|3317
5ON6|1|1|G|3318
5ON6|1|1|U|3319
5ON6|1|1|A|3320
*
5ON6|1|1|U|3387
5ON6|1|1|C|3388
5ON6|1|1|U|3389
5ON6|1|1|G|3390

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L31-A

Chain k

60S ribosomal protein L3

Chain x

60S ribosomal protein L17-A