J3_5ON6_077
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 5ON6|1|AR|U|117, 5ON6|1|AR|G|120, 5ON6|1|AR|A|121, 5ON6|1|AR|U|147, 5ON6|1|AR|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ON6|1|AR|C|113
5ON6|1|AR|A|114
5ON6|1|AR|A|115
5ON6|1|AR|A|116
5ON6|1|AR|U|117
5ON6|1|AR|U|118
5ON6|1|AR|U|119
5ON6|1|AR|G|120
5ON6|1|AR|A|121
5ON6|1|AR|A|122
5ON6|1|AR|A|123
5ON6|1|AR|U|124
*
5ON6|1|AR|A|144
5ON6|1|AR|G|145
5ON6|1|AR|U|146
5ON6|1|AR|U|147
5ON6|1|AR|G|148
5ON6|1|AR|U|149
5ON6|1|AR|A|150
5ON6|1|AR|A|151
5ON6|1|AR|U|152
5ON6|1|AR|U|153
5ON6|1|AR|U|154
5ON6|1|AR|G|155
5ON6|1|AR|G|156
5ON6|1|AR|A|157
5ON6|1|AR|G|158
*
5ON6|1|AR|C|263
5ON6|1|AR|G|264
5ON6|1|AR|A|265
5ON6|1|AR|A|266
5ON6|1|AR|G|267
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CJ
- 60S ribosomal protein L8-A
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DK
- 60S ribosomal protein L36-A
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