J3_5OOL_001

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUAG*CAAUAGAUAUAGUAC*GGAAAG

Length

25 nucleotides

Bulged bases

5OOL|1|A|U|1774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OOL|1|A|C|1678
5OOL|1|A|U|1679
5OOL|1|A|A|1680
5OOL|1|A|G|1681
*
5OOL|1|A|C|1771
5OOL|1|A|A|1772
5OOL|1|A|A|1773
5OOL|1|A|U|1774
5OOL|1|A|A|1775
5OOL|1|A|G|1776
5OOL|1|A|A|1777
5OOL|1|A|U|1778
5OOL|1|A|A|1779
5OOL|1|A|U|1780
5OOL|1|A|A|1781
5OOL|1|A|G|1782
5OOL|1|A|U|1783
5OOL|1|A|A|1784
5OOL|1|A|C|1785
*
5OOL|1|A|G|1792
5OOL|1|A|G|1793
5OOL|1|A|A|1794
5OOL|1|A|A|1795
5OOL|1|A|A|1796
5OOL|1|A|G|1797

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial

Chain R

39S ribosomal protein L20, mitochondrial

Chain U

39S ribosomal protein L23, mitochondrial

Chain V

39S ribosomal protein L24, mitochondrial

Chain Y

39S ribosomal protein L47, mitochondrial

Chain c

39S ribosomal protein L44, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial