J3_5OOL_002

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5OOL|1|A|G|1918

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OOL_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0961

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5OOL|1|A|C|1915
5OOL|1|A|G|1916
5OOL|1|A|A|1917
5OOL|1|A|G|1918
5OOL|1|A|C|1919
5OOL|1|A|U|1920
5OOL|1|A|A|1921
*
5OOL|1|A|U|1983
5OOL|1|A|A|1984
5OOL|1|A|G|1985
*
5OOL|1|A|C|2001
5OOL|1|A|G|2002
5OOL|1|A|A|2003
5OOL|1|A|G|2004

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial