J3_5OOL_003

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5OOL_003 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1336

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5OOL|1|A|C|1930
5OOL|1|A|A|1931
5OOL|1|A|G|1932
*
5OOL|1|A|C|1942
5OOL|1|A|A|1943
5OOL|1|A|C|1944
5OOL|1|A|A|1945
5OOL|1|A|C|1946
*
5OOL|1|A|G|1970
5OOL|1|A|A|1971
5OOL|1|A|A|1972
5OOL|1|A|G|1973

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial