J3_5OOL_004

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UAAGCCUG*CAACC*GCA

Length

16 nucleotides

Bulged bases

5OOL|1|A|A|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OOL|1|A|U|2336
5OOL|1|A|A|2337
5OOL|1|A|A|2338
5OOL|1|A|G|2339
5OOL|1|A|C|2340
5OOL|1|A|C|2341
5OOL|1|A|U|2342
5OOL|1|A|G|2343
*
5OOL|1|A|C|2423
5OOL|1|A|A|2424
5OOL|1|A|A|2425
5OOL|1|A|C|2426
5OOL|1|A|C|2427
*
5OOL|1|A|G|2436
5OOL|1|A|C|2437
5OOL|1|A|A|2438

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain U

39S ribosomal protein L23, mitochondrial

Chain s

39S ribosomal protein S30, mitochondrial