J3_5OPT_004

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAGC*GAGAUUAUG*CAG

Length

16 nucleotides

Bulged bases

5OPT|1|E|G|924, 5OPT|1|E|A|974, 5OPT|1|E|U|975, 5OPT|1|E|U|976, 5OPT|1|E|U|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|C|922
5OPT|1|E|A|923
5OPT|1|E|G|924
5OPT|1|E|C|925
*
5OPT|1|E|G|971
5OPT|1|E|A|972
5OPT|1|E|G|973
5OPT|1|E|A|974
5OPT|1|E|U|975
5OPT|1|E|U|976
5OPT|1|E|A|977
5OPT|1|E|U|978
5OPT|1|E|G|979
*
5OPT|1|E|C|1188
5OPT|1|E|A|1189
5OPT|1|E|G|1190

Current chains

Chain E

18S rRNA

Nearby chains

Chain Q

Ribosomal protein S7, putative

Chain R

40S ribosomal protein S13, putative